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nextflow-development

0.0

Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow, FASTQ analysis, variant calling, gene expression, differential expression, GEO reanalysis, GSE/GSM/SRR accessions, or samplesheet creation.

Marketplace
#references#pipelines#Pipeline#GEO#troubleshooting.md#DECISION POINT#SRA#nf-core

Third-Party Agent Skill: Review the code before installing. Agent skills execute in your AI assistant's environment and can access your files. Learn more about security

Installation for Agentic Skill

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skilz install anthropics/life-sciences/nextflow-development
skilz install anthropics/life-sciences/nextflow-development --agent opencode
skilz install anthropics/life-sciences/nextflow-development --agent codex
skilz install anthropics/life-sciences/nextflow-development --agent gemini

First time? Install Skilz: pip install skilz

Works with 22+ AI coding agents

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Download Agent Skill ZIP

Extract and copy to ~/.claude/skills/ then restart Claude Desktop

1. Clone the repository:
git clone https://github.com/anthropics/life-sciences
2. Copy the agent skill directory:
cp -r life-sciences/nextflow-development ~/.claude/skills/
View on GitHub

Need detailed installation help? Check our platform-specific guides:

Claude Desktop Guide Claude Code Guide Troubleshooting

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Agentic Skill Details

Owner
anthropics (GitHub)
Repository
life-sciences
Type
Other
Meta-Domain
N/A
Primary Domain
N/A
Market Score
0.0
Agentic Skill Grades →

AI-Detected Topics

Extracted using NLP analysis

references pipelines Pipeline GEO troubleshooting.md DECISION POINT SRA nf-core troubleshooting.md references variant calling

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