sragent

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Query the Sequence Read Archive (SRA), retrieve scientific publications, and analyze genomics metadata using the SRAgent toolkit. Supports accession conversion (GSE→SRX→SRR), BigQuery metadata queries, manuscript downloads from multiple sources, and scRNA-seq technology identification. Use when working with SRA/GEO datasets, finding publications, or analyzing single-cell sequencing experiments.

Also in: database

Third-Party Agent Skill: Review the code before installing. Agent skills execute in your AI assistant's environment and can access your files. Learn more about security

Installation for Agentic Skill

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Claude Code (CLI) Fast

skilz install ArcInstitute/SRAgent/sragent

OpenCode (CLI) Fast

skilz install ArcInstitute/SRAgent/sragent --agent opencode

OpenAI Codex (CLI) Native

skilz install ArcInstitute/SRAgent/sragent --agent codex

Gemini CLI (Project) Project

skilz install ArcInstitute/SRAgent/sragent --agent gemini

First time? Install Skilz: pip install skilz

Works with 14 AI coding assistants

Cursor, Aider, Copilot, Windsurf, Qwen, Kimi, and more...

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For Claude Desktop Easy

Download Agent Skill ZIP

Extract and copy to ~/.claude/skills/ then restart Claude Desktop

Manual Installation

1. Clone the repository:

git clone https://github.com/ArcInstitute/SRAgent

2. Copy the agent skill directory:

cp -r SRAgent/claude-skill ~/.claude/skills/

View on GitHub

Need detailed installation help? Check our platform-specific guides:

Claude Desktop Guide Claude Code Guide Troubleshooting

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