pathml

Name: pathml
Rating: 1.4 (1 reviews)
Author: davila7

27.3

Computational pathology toolkit for analyzing whole-slide images (WSI) and multiparametric imaging data. Use this skill when working with histopathology slides, H&E stained images, multiplex immunofluorescence (CODEX, Vectra), spatial proteomics, nucleus detection/segmentation, tissue graph construction, or training ML models on pathology data. Supports 160+ slide formats including Aperio SVS, NDPI, DICOM, OME-TIFF for digital pathology workflows.

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Third-Party Agent Skill: Review the code before installing. Agent skills execute in your AI assistant's environment and can access your files. Learn more about security

Installation for Agentic Skill

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Claude Code (CLI) Fast

skilz install davila7/claude-code-templates/pathml

OpenCode (CLI) Fast

skilz install davila7/claude-code-templates/pathml --agent opencode

OpenAI Codex (CLI) Native

skilz install davila7/claude-code-templates/pathml --agent codex

Gemini CLI (Project) Project

skilz install davila7/claude-code-templates/pathml --agent gemini

First time? Install Skilz: pip install skilz

Works with 14 AI coding assistants

Cursor, Aider, Copilot, Windsurf, Qwen, Kimi, and more...

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For Claude Desktop Easy

Download Agent Skill ZIP

Extract and copy to ~/.claude/skills/ then restart Claude Desktop

Manual Installation

1. Clone the repository:

git clone https://github.com/davila7/claude-code-templates

2. Copy the agent skill directory:

cp -r claude-code-templates/cli-tool/components/skills/scientific/pathml ~/.claude/skills/

View on GitHub

Need detailed installation help? Check our platform-specific guides:

Claude Desktop Guide Claude Code Guide Troubleshooting

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Agentic Skill Details

Owner: davila7 (GitHub)
Repository: claude-code-templates
Type: Non-Technical
Meta-Domain: general
Primary Domain: general
Sub-Domain: skill use
Market Score: 27.3

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