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scanpy

28

"Single-cell RNA-seq analysis. Load .h5ad/10X data, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis."

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Third-Party Agent Skill: Review the code before installing. Agent skills execute in your AI assistant's environment and can access your files. Learn more about security

Installation for Agentic Skill

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Claude Code (CLI) Fast

skilz install davila7/claude-code-templates/scanpy

OpenCode (CLI) Fast

skilz install davila7/claude-code-templates/scanpy --agent opencode

OpenAI Codex (CLI) Native

skilz install davila7/claude-code-templates/scanpy --agent codex

Gemini CLI (Project) Project

skilz install davila7/claude-code-templates/scanpy --agent gemini

First time? Install Skilz: pip install skilz

Works with 22+ AI coding assistants

Cursor, Aider, Copilot, Windsurf, Qwen, Kimi, and more...

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For Claude Desktop Easy

Download Agent Skill ZIP

Extract and copy to ~/.claude/skills/ then restart Claude Desktop

Manual Installation

1. Clone the repository:

git clone https://github.com/davila7/claude-code-templates

2. Copy the agent skill directory:

cp -r claude-code-templates/cli-tool/components/skills/scientific/scanpy ~/.claude/skills/

Need detailed installation help? Check our platform-specific guides:

Claude Desktop Guide Claude Code Guide Troubleshooting

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Agentic Skill Details

Owner: davila7 (GitHub)
Repository: claude-code-templates
Type: Non-Technical
Meta-Domain: general
Primary Domain: general
Sub-Domain: data analysis research skill
Market Score: 28

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