omero-integration

13,835 stars 1,200 forks Updated Dec 26, 2025

68.9

"Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows."

Commands Marketplace

#OMERO#images#annotations#Image#Group Context

Also in: docker database api

Third-Party Skill: Review the code before installing. Skills execute in your AI assistant's environment and can access your files. Learn more about security

Installation

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Claude Code (CLI) Fast

skilz install davila7_claude-code-templates/omero-integration

OpenCode (CLI) Fast

skilz install davila7_claude-code-templates/omero-integration --agent opencode

OpenAI Codex (CLI) Native

skilz install davila7_claude-code-templates/omero-integration --agent codex

Gemini CLI (Project) Project

skilz install davila7_claude-code-templates/omero-integration --agent gemini

First time? Install Skilz: pip install skilz

Works with 14 AI coding assistants

Cursor, Aider, Copilot, Windsurf, Qwen, Kimi, and more...

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For Claude Desktop Easy

Download Skill ZIP

Extract and copy to ~/.claude/skills/ then restart Claude Desktop

Manual Installation

1. Clone the repository:

git clone https://github.com/davila7/claude-code-templates

2. Copy the skill directory:

cp -r claude-code-templates/cli-tool/components/skills/scientific/omero-integration ~/.claude/skills/

View on GitHub

Need detailed installation help? Check our platform-specific guides:

Claude Desktop Guide Claude Code Guide Troubleshooting

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Commands Marketplace

#DICOM files#DICOM#pydicom

+github +data analysis