Skillzwave

scanpy

13,835 stars 1,200 forks Updated Dec 26, 2025
65.5

"Single-cell RNA-seq analysis. Load .h5ad/10X data, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis."

Commands Marketplace
#genes#plots#quality control#gene#marker genes
Also in: excel python github

Third-Party Skill: Review the code before installing. Skills execute in your AI assistant's environment and can access your files. Learn more about security

Installation

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skilz install davila7_claude-code-templates/scanpy
skilz install davila7_claude-code-templates/scanpy --agent opencode
skilz install davila7_claude-code-templates/scanpy --agent codex
skilz install davila7_claude-code-templates/scanpy --agent gemini

First time? Install Skilz: pip install skilz

Works with 14 AI coding assistants

Cursor, Aider, Copilot, Windsurf, Qwen, Kimi, and more...

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Download Skill ZIP

Extract and copy to ~/.claude/skills/ then restart Claude Desktop

1. Clone the repository:
git clone https://github.com/davila7/claude-code-templates
2. Copy the skill directory:
cp -r claude-code-templates/cli-tool/components/skills/scientific/scanpy ~/.claude/skills/
View on GitHub

Need detailed installation help? Check our platform-specific guides:

Claude Desktop Guide Claude Code Guide Troubleshooting

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Details

Owner
davila7
Repository
claude-code-templates
Stars
13,835
Forks
1,200
Type
Technical
Meta-Domain
data ai
Primary Domain
data analysis
Sub-Domain
analysis research skill
Skill Size
48.8 KB
Files
6
Quality Score
65.5

AI-Detected Topics

Extracted using NLP analysis

genes plots quality control gene marker genes

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