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scvi-tools

13,835 stars 1,200 forks Updated Dec 26, 2025
68.9

This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATAC-seq, CITE-seq, spatial transcriptomics, and other single-cell modalities. Use this skill for probabilistic modeling, batch correction, dimensionality reduction, differential expression, cell type annotation, multimodal integration, and spatial analysis tasks.

Commands Marketplace
#Basic Usage#Key Features#batch correction#analysis#batch
Also in: data analysis excel github

Third-Party Skill: Review the code before installing. Skills execute in your AI assistant's environment and can access your files. Learn more about security

skilz install davila7_claude-code-templates/scvi-tools
skilz install davila7_claude-code-templates/scvi-tools --agent opencode
skilz install davila7_claude-code-templates/scvi-tools --agent codex
skilz install davila7_claude-code-templates/scvi-tools --agent gemini

First time? Install Skilz: pip install skilz

Works with 14 AI coding assistants

Cursor, Aider, Copilot, Windsurf, Qwen, Kimi, and more...

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Extract and copy to ~/.claude/skills/ then restart Claude Desktop

1. Clone the repository:
git clone https://github.com/davila7/claude-code-templates
2. Copy the skill directory:
cp -r claude-code-templates/cli-tool/components/skills/scientific/scvi-tools ~/.claude/skills/

Need detailed installation help? Check our platform-specific guides:

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Details

Owner
davila7
Stars
13,835
Forks
1,200
Type
Technical
Meta-Domain
data ai
Primary Domain
machine learning
Sub-Domain
learning models model
Skill Size
95.1 KB
Files
9
Quality Score
68.9

AI-Detected Topics

Extracted using NLP analysis

Basic Usage Key Features batch correction analysis batch

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